About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016399.1_1004_1147_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1004 - 1147
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
GCTGCCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
GATGCCTGAGCC
Flanking Amino Acid:
GWLTGFTGSAGTVVVTLDRA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
62.2
0.28
0.9
51.3
38
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
49.8
-0
1.8
61.71
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023417
Chromosome:
PEDO01016399.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035235
162 - 3310
3149