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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016399.1_1212_1296_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1212 - 1296
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTTCTCACGG
Flanking Amino Acid:
YIVPSTDAHMSEYIAERDSR
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.3
0.7
0.7
72.9
31.9
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
40.4
-0.8
2
39.43
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023417
Chromosome:
PEDO01016399.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035235
162 - 3310
3149