Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016411.1_146_879_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

146 - 879

Intron Length:

734

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCCAATGGG

5'SS Class:

major

3'SS Sequence:

CCACCACAACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TAAGTTCTAACT

Flanking Amino Acid:

WGAEDPSPSLVGLPICPSHW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.3

58.1

43.3

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

53.5

0.08

44.6

35.4

Minor 5ss

16.1

-3.9

3.4

14.3

28.5

Minor BPS

51.8

0.14

1.7

70.11

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027106

Chromosome:

PEDO01016411.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041586

78 - 1132

1055