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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016418.1_2163_3011_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2163 - 3011
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TCCCCCCAACGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCTGATTT
Flanking Amino Acid:
IHGTPESPPAGARSRGRGRW
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
46.3
-0.2
1.6
47.7
34.4
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
53.7
0.19
1.7
71.82
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025696
Chromosome:
PEDO01016418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033994
21 - 3802
3782