About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016459.1_2449_2774_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2449 - 2774
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
GCTTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
CAGGCACTAACG
Flanking Amino Acid:
MDFSPVKGVLGEDKASYSTS
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.3
41.8
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
76.5
0.6
1
72.6
42.4
Minor 5ss
29.8
-2.3
3.2
29
43.5
Minor BPS
43.7
-0.6
2
46.32
45.8

Associated Gene:

Gene:
CHEK1
Ensembl Gene ID:
ENSAPLG00000014973
Chromosome:
PEDO01016459.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015624
625 - 4853
4229