Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016459.1_2884_2953_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2884 - 2953

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

TCTCCTCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGGAT

U12 Branch Point Sequence:

CGTGATTGGATT

Flanking Amino Acid:

DRWYCKPLKKGVKRARVSSG

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

65.4

40.4

Major BPS

62.6

0.31

1.4

63.1

44.4

Major PPT

0.58

0.9

72.7

Minor 5ss

29.1

-2.4

3.5

32.5

42.6

Minor BPS

43.8

-0.4

1.7

56.67

40.4

Associated Gene:

Gene:

CHEK1

Ensembl Gene ID:

ENSAPLG00000014973

Chromosome:

PEDO01016459.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015624

625 - 4853

4229