About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016465.1_1692_1796_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1692 - 1796

Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACGAGCC

5'SS Class:
strong_major

3'SS Sequence:
TGTCTGCTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATCAGAC

U12 Branch Point Sequence:
TGGATGGCAAGT

Flanking Amino Acid:
EVERKKLGLQGEKDAAVEES

Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.4
0.72
1
67.4
39.1

Major BPS
55.4
0.14
1
52.4
34.3

Major PPT
79.8
0.67
0.9
73.2
37.2

Minor 5ss
30.6
-2.2
3.5
42.6
44.4

Minor BPS
32.2
-1.2
2.5
48.65
44.5

Associated Gene:

Gene:
ADD2

Ensembl Gene ID:

Chromosome:
PEDO01016465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 5277
5257

21 - 5277
5257