About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016465.1_3242_3724_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3242 - 3724
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CCTCCTTTGACA
Flanking Amino Acid:
FHLQAACEVQGYRTGYTYRY
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
85.4
0.8
0.8
80.7
31.3
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
65
0.47
1.3
67.34
39.5

Associated Gene:

Gene:
ADD2
Ensembl Gene ID:
ENSAPLG00000013568
Chromosome:
PEDO01016465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035131
21 - 5277
5257