About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016465.1_4473_4562_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
4473 - 4562

Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTGAGTGCC

5'SS Class:
strong_major

3'SS Sequence:
TTTCCCTGTGCAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TTTTATTTCCCT

Flanking Amino Acid:
WAQLGDASVTLRVSKEQEHF

Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.5
0.74
0.9
69.7
35.1

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
81.3
0.7
0.9
76.8
31.7

Minor 5ss
29
-2.4
3.1
36.8
40.4

Minor BPS
42.8
-0.4
3.6
80.33
41.9

Associated Gene:

Gene:
ADD2

Ensembl Gene ID:

Chromosome:
PEDO01016465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 5277
5257

21 - 5277
5257