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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016473.1_2127_2614_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2127 - 2614
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTGGAGGT
5'SS Class:
major
3'SS Sequence:
AGGCTTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTCTTAAACT
Flanking Amino Acid:
ENGCATLKDKNDCFPGEPVP
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.3
60.8
40.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66
0.36
1
58.3
42.5
Minor 5ss
18.5
-3.6
4
30.4
36.8
Minor BPS
67.2
0.62
1.7
80.14
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026173
Chromosome:
PEDO01016473.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028363
485 - 2657
2173