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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016473.1_681_1001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
681 - 1001
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCT
5'SS Class:
major
3'SS Sequence:
GTCTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGTCTCACAGCT
Flanking Amino Acid:
RYVCRWNGSAGHGGCKLCPQ
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
66.3
45.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
78.7
0.65
0.8
69.6
36.8
Minor 5ss
46.1
-0.4
2.9
66.6
44.3
Minor BPS
45.3
-0.2
2
67.74
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026173
Chromosome:
PEDO01016473.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028858
378 - 2689
2312