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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016493.1_2822_3551_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2822 - 3551
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
MLCRKLFQLLVPKEK
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89.9
0.9
0.6
88.1
21.8
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
MTRF1
Ensembl Gene ID:
ENSAPLG00000009317
Chromosome:
PEDO01016493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009722
2730 - 9950
7221