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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016493.1_4220_5259_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4220 - 5259
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
SVIVLPQPEEVDVKVDPRDL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.1
0.63
0.9
70.3
40
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
MTRF1
Ensembl Gene ID:
ENSAPLG00000009317
Chromosome:
PEDO01016493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009722
2730 - 9950
7221