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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016493.1_6683_8311_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6683 - 8311
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAACC
Flanking Amino Acid:
SQEQSARKLQLGTRAQSERI
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
76.7
37.4
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
49
-0
2.1
72.11
38.8

Associated Gene:

Gene:
MTRF1
Ensembl Gene ID:
ENSAPLG00000009317
Chromosome:
PEDO01016493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009722
2730 - 9950
7221