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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016493.1_8411_9749_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8411 - 9749
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGTT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
TGTTTTTTCATA
Flanking Amino Acid:
RIAHDARNIKEILSGKEELD
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
74.9
34.9
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
83.6
0.76
0.7
80.1
32
Minor 5ss
29.8
-2.3
3.7
46.5
48.8
Minor BPS
58.8
0.27
1.7
70.9
36

Associated Gene:

Gene:
MTRF1
Ensembl Gene ID:
ENSAPLG00000009317
Chromosome:
PEDO01016493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009722
2730 - 9950
7221