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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016507.1_2899_2999_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2899 - 2999
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTGTAA
5'SS Class:
major
3'SS Sequence:
TGGTTTGGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTCTCCTTGGTT
Flanking Amino Acid:
IYVDSQKENERWAIISKSQM
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
61
35.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
67.2
0.39
1.1
65.8
45.3
Minor 5ss
29.6
-2.3
3.3
37.7
47
Minor BPS
46.2
-0.2
3.5
74.27
43.5

Associated Gene:

Gene:
NARS1
Ensembl Gene ID:
ENSAPLG00000015701
Chromosome:
PEDO01016507.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016426
1954 - 13179
11226