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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016507.1_4740_5537_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4740 - 5537
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TCTTTCCTACCA
Flanking Amino Acid:
FGWIHRLRRQGKNLMFIVLR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
80.8
0.69
0.8
74.5
35
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
54.9
0.15
2
71.21
41.3

Associated Gene:

Gene:
NARS1
Ensembl Gene ID:
ENSAPLG00000015701
Chromosome:
PEDO01016507.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016426
1954 - 13179
11226