Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016507.1_7869_8267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7869 - 8267

Intron Length:

399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

TGTTCTTTAACA

Flanking Amino Acid:

DHFFANGYYEVTPPTLVQTQ

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

89.9

22.1

Major BPS

77.5

0.68

79.6

Major PPT

80.9

0.7

0.9

77.2

35.8

Minor 5ss

-1

2.8

51.7

39.1

Minor BPS

86.2

1.13

0.9

88.17

28.7

Associated Gene:

Gene:

NARS1

Ensembl Gene ID:

ENSAPLG00000015701

Chromosome:

PEDO01016507.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016426

1954 - 13179

11226