Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016549.1_26287_26512_F

Intron Information:

Intron Rank:

126650

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26287 - 26512

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GC-TG

5'SS Sequence:

CTG|GCCTCTACT

5'SS Class:

weak_major

3'SS Sequence:

CCGTTTTTTACTG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TGCTTTTTTACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.12

1.3

63.1

42.7

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

45.8

-0.2

3.2

71.3

38.4

Minor 5ss

35.2

-1.7

3.7

49.5

41.5

Minor BPS

61.2

0.43

1.6

75.79

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018267

Chromosome:

PEDO01016549.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025118

25881 - 28011

2131