Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016549.1_4466_4533_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

3UTR

Intron Coordinates:

4466 - 4533

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AA

5'SS Sequence:

AAG|GTGTCCCCA

5'SS Class:

weak_major

3'SS Sequence:

TTCTGTCACCCAA|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

CCTTCTGTCACC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.6

0.27

1.2

51.2

41.5

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

41.5

-0.4

3.2

58.2

42.3

Minor 5ss

44.3

-0.6

2.8

57.3

46.9

Minor BPS

46.9

-0.2

2.4

60.93

45.2

Associated Gene:

Gene:

FLOT1

Ensembl Gene ID:

ENSAPLG00000022603

Chromosome:

PEDO01016549.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042295

579 - 5110

4532