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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016549.1_7711_10569_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7711 - 10569
Intron Length:
2859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACAGC
5'SS Class:
major
3'SS Sequence:
CCCTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACCT
Flanking Amino Acid:
GQCGNQIGAKFWEVISDEHG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.6
0.76
0.7
76
32.6
Minor 5ss
33.6
-1.9
3
43
44.2
Minor BPS
54.4
0.22
1.8
71.74
45.4

Associated Gene:

Gene:
TUBB
Ensembl Gene ID:
ENSAPLG00000008109
Chromosome:
PEDO01016549.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008420
5263 - 11162
5900