Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016551.1_1119_1362_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1119 - 1362

Intron Length:

244

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCCGTGC

5'SS Class:

major

3'SS Sequence:

TTGGCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAC

U12 Branch Point Sequence:

CCCCTTCCAACC

Flanking Amino Acid:

PAAKMGVVKEGDQIVSATVY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.2

0.26

1.2

Major BPS

61.9

0.3

1.2

70.7

33.5

Major PPT

76.8

0.6

0.9

69.9

36.5

Minor 5ss

36.1

-1.6

3.5

50.3

46.3

Minor BPS

41.3

-0.6

1.7

43.52

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016739

Chromosome:

PEDO01016551.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034944

965 - 1655

691