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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016583.1_1286_3080_R

Intron Information:

Intron Rank:
139459
Intron Class:
major
Intron Phase:
Intron Coordinates:
1286 - 3080
Intron Length:
1795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
81.3
34.9
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
70.9
0.73
2
88.75
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022511
Chromosome:
PEDO01016583.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047912
21 - 5361
5341