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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016583.1_3143_3678_R

Intron Information:

Intron Rank:
139450
Intron Class:
major
Intron Phase:
Intron Coordinates:
3143 - 3678
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.4
0.39
1
59.3
41.8
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
63.3
0.4
1.7
74.1
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022511
Chromosome:
PEDO01016583.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022750
2205 - 5361
3157