Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_12101_12218_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12101 - 12218

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGCCG

5'SS Class:

major

3'SS Sequence:

CTCCCTCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TCCTCCCTCACG

Flanking Amino Acid:

GQILTNAQGQVIGTLPWVVN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.31

1.3

47.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

70.2

0.45

0.8

65.1

29.4

Minor 5ss

35.5

-1.6

3.4

48.5

47.2

Minor BPS

49.4

-0.1

2.2

59.61

47.9

Associated Gene:

Gene:

POU6F1

Ensembl Gene ID:

ENSAPLG00000017700

Chromosome:

PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018564

11906 - 13647

1742