Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_19568_19795_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19568 - 19795

Intron Length:

228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCGGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

AGAGCTGCAGCT

Flanking Amino Acid:

LPEINGKLVKSIFRVVFHDR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

72.4

39.5

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

79.5

0.66

0.8

70.6

36.2

Minor 5ss

35.7

-1.6

3.3

47.1

48.3

Minor BPS

37.9

-0.8

2.2

52.06

42.6

Associated Gene:

Gene:

TFCP2

Ensembl Gene ID:

ENSAPLG00000012157

Chromosome:

PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012736

18078 - 27471

9394