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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_19902_20041_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19902 - 20041
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCTAACAAAACC
Flanking Amino Acid:
NRPGDRILDIDIPMSVGIID
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
77
0.61
0.9
70.1
36.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
42.9
-0.5
2.1
52.78
44.3

Associated Gene:

Gene:
TFCP2
Ensembl Gene ID:
ENSAPLG00000012157
Chromosome:
PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012736
18078 - 27471
9394