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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_20149_20741_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20149 - 20741
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACGGCACT
Flanking Amino Acid:
PSKRTSVFIQVHCISTEFTM
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.1
0.47
0.8
61.9
34.9
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
39.9
-0.7
2.5
63.18
46.4

Associated Gene:

Gene:
TFCP2
Ensembl Gene ID:
ENSAPLG00000012157
Chromosome:
PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012736
18078 - 27471
9394