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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_23701_24306_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23701 - 24306
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCAAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GCTTTTGTGACT
Flanking Amino Acid:
TFSRLFRNFSGADLLKLTRE
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
68.4
0.41
1
60.1
40.2
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
49.9
0.07
2
70.47
41.3

Associated Gene:

Gene:
TFCP2
Ensembl Gene ID:
ENSAPLG00000012157
Chromosome:
PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012736
18078 - 27471
9394