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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_50765_51679_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50765 - 51679
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTCCTTTCCT
Flanking Amino Acid:
TSDTDLRTPDEDGSMDGIST
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.9
39.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.6
0.62
0.7
69.6
31.2
Minor 5ss
40.1
-1.1
2.8
51
45.2
Minor BPS
45.3
-0.2
3.6
75.67
46.9

Associated Gene:

Gene:
SLC11A2
Ensembl Gene ID:
ENSAPLG00000007275
Chromosome:
PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007620
50684 - 62586
11903