About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_56432_56649_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56432 - 56649
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACCC
Flanking Amino Acid:
GTYSGQFVMEGFLNLRWSRF
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
49.6
-0
1.9
61.43
44.4

Associated Gene:

Gene:
SLC11A2
Ensembl Gene ID:
ENSAPLG00000007275
Chromosome:
PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007620
50684 - 62586
11903