Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016594.1_57157_57286_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57157 - 57286

Intron Length:

130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTACG

5'SS Class:

major

3'SS Sequence:

ATTTTGCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TGTGCTCTGATT

Flanking Amino Acid:

SSVMNDFANGLFWKIGGGAM

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.1

68.7

Major BPS

0.72

38.9

Major PPT

74.1

0.54

70.1

40.8

Minor 5ss

-1.2

2.7

53.9

42.7

Minor BPS

51.2

0.12

1.8

72.08

39.4

Associated Gene:

Gene:

SLC11A2

Ensembl Gene ID:

ENSAPLG00000007275

Chromosome:

PEDO01016594.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007620

50684 - 62586

11903