Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016610.1_1508_2604_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1508 - 2604

Intron Length:

1097

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCGCACATG

5'SS Class:

weak_major

3'SS Sequence:

GGGCTGGTGCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGGGAC

U12 Branch Point Sequence:

GCTTTGGGGACA

Flanking Amino Acid:

PSRGWELAGEGTAGWQPGDR

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.2

0.03

1.3

51.3

45.2

Major BPS

42.6

-0.4

1.5

34.5

43.7

Major PPT

46.1

-0.2

1.2

36.7

44.3

Minor 5ss

25.1

-2.9

29.9

43.4

Minor BPS

-0.9

2.5

50.68

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014405

Chromosome:

PEDO01016610.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015002

1321 - 3652

2332