Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016610.1_3230_3317_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3230 - 3317

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCGGC

5'SS Class:

major

3'SS Sequence:

CTCTGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCACAA

U12 Branch Point Sequence:

ATCACAAAACTC

Flanking Amino Acid:

QSGHQLRAQQELLDTLQQEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.2

0.34

1.3

53.3

45.2

Major BPS

59.7

0.24

29.8

Major PPT

71.1

0.48

0.8

61.7

Minor 5ss

41.2

-1

3.5

59.3

45.4

Minor BPS

35.4

-1.1

43.26

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014405

Chromosome:

PEDO01016610.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015002

1321 - 3652

2332