Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016617.1_2170_2334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2170 - 2334

Intron Length:

165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

GCTCTGCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CCGGGCTGACGC

Flanking Amino Acid:

FKNSRFFPGRIRRLIGDFGV

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

54.2

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

72.3

0.5

0.9

61.8

Minor 5ss

25.1

-2.9

3.1

22.5

37.5

Minor BPS

33.7

-1.2

2.1

33.56

42.2

Associated Gene:

Gene:

SLC4A2

Ensembl Gene ID:

ENSAPLG00000018161

Chromosome:

PEDO01016617.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041208

965 - 4346

3382