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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016629.1_936_1137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
936 - 1137
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AGTGCCAGAGCG
Flanking Amino Acid:
DQVLDRIRKLADQCTGLQGF
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
70.2
35.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
29.3
-2.4
2.9
32.5
36.4
Minor BPS
42.4
-0.7
2
48.93
44

Associated Gene:

Gene:
TUBA4A
Ensembl Gene ID:
ENSAPLG00000010326
Chromosome:
PEDO01016629.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010750
21 - 3063
3043