Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016652.1_1030_1223_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1030 - 1223

Intron Length:

194

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGCTAAAT

5'SS Class:

major

3'SS Sequence:

CCTGAACCACCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCACCAT

U12 Branch Point Sequence:

ATTCCCTGAACC

Flanking Amino Acid:

MMPNSSSITEF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.7

0.28

1.1

62.5

37.3

Major BPS

0.08

1.4

42.7

Major PPT

58.6

0.19

48.5

39.2

Minor 5ss

28.8

-2.4

3.1

36.9

42.3

Minor BPS

0.7

1.4

79.95

33.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021404

Chromosome:

PEDO01016652.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013587

58 - 1226

1169