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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016688.1_888_1392_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
888 - 1392
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCCCGCTGAGCC
Flanking Amino Acid:
VEALQEFGPISYVVVMPKKR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
69.5
0.44
0.9
62.3
34.3
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
40.7
-0.7
2
44.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019672
Chromosome:
PEDO01016688.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019682
1 - 1890
1890