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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016715.1_2427_2563_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2427 - 2563
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCCCCTCTAACA
Flanking Amino Acid:
RGPFPKQLVQIKSNKDKEIK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
64.2
0.32
0.9
53.7
36.7
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
49.9
-0
1.7
58.02
41.5

Associated Gene:

Gene:
CDH1
Ensembl Gene ID:
ENSAPLG00000003035
Chromosome:
PEDO01016715.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018267
3 - 2629
2627
ENSAPLT00000003106
3 - 2617
2615