About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016715.1_824_929_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
824 - 929
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
CTCCCTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CCCCGCTGACCC
Flanking Amino Acid:
DPDKDQRNRITYRMGSDPAG
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
42.7
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71
0.47
0.9
63.9
36.7
Minor 5ss
35.5
-1.6
2.8
39.4
39.7
Minor BPS
40.4
-0.7
2
43.78
44.1

Associated Gene:

Gene:
CDH1
Ensembl Gene ID:
ENSAPLG00000003035
Chromosome:
PEDO01016715.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018267
3 - 2629
2627