Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016750.1_385_438_F

Intron Information:

Intron Rank:

133381

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

385 - 438

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

ATG|GTGGAGGTC

5'SS Class:

weak_major

3'SS Sequence:

GGGAGTGCCCGTG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCATGAC

U12 Branch Point Sequence:

CGTGGTAGAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.2

0.22

1.1

37.1

Major BPS

49.9

-0

1.2

37.8

Major PPT

24.3

-1.4

3.2

23.5

37.5

Minor 5ss

26.4

-2.7

3.8

36.4

43.5

Minor BPS

35.7

-1

2.1

49.66

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021730

Chromosome:

PEDO01016750.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029917

21 - 1375

1355