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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016750.1_85_216_F

Intron Information:

Intron Rank:
133382
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
85 - 216
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTTCGTG
5'SS Class:
weak_major
3'SS Sequence:
GACCGTGGTAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.4
52.5
44.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
44.1
-0.3
1.7
40.9
42.7
Minor 5ss
41.5
-0.9
3.2
56
48.2
Minor BPS
51.3
0.04
2
69.44
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021730
Chromosome:
PEDO01016750.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029917
21 - 1375
1355