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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016845.1_1402_1709_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1402 - 1709
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAG
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
LDTTFLERAQESLLFLLKSL
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
62.7
43.7
Major BPS
58
0.2
1.5
65.8
39.5
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
39
-1.2
3
51.6
44.8
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027656
Chromosome:
PEDO01016845.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031127
21 - 4261
4241