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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016845.1_3324_3430_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3324 - 3430
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
CCTTTCCGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAT
U12 Branch Point Sequence:
TGGGGATCAGCT
Flanking Amino Acid:
AKVQALLQDETQQLHKATKG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
46.5
-0.2
1.6
42.8
49.4
Major PPT
77.1
0.61
0.9
69.1
37
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
37.7
-0.8
2.2
54.09
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027656
Chromosome:
PEDO01016845.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031127
21 - 4261
4241