About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016875.1_2474_2603_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
2474 - 2603

Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGACGAGG

5'SS Class:
major

3'SS Sequence:
CCTCTTTTGGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGCTCAC

U12 Branch Point Sequence:
GGGGGCTCACCC

Flanking Amino Acid:
CLLGSPDPVPGSPIAVLVVG

Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.6
0.49
1.2
60.4
45.8

Major BPS
52.1
0.05
1.3
57
41.8

Major PPT
78.1
0.63
0.9
75.6
32.8

Minor 5ss
31.8
-2.1
3.1
39.7
45.9

Minor BPS
39.1
-0.8
2.1
43.7
43.8

Associated Gene:

Gene:
EEF1AKNMT

Ensembl Gene ID:

Chromosome:
PEDO01016875.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

635 - 5345
4711