About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016875.1_3551_3896_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3551 - 3896

Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCA|GTGAGTACA

5'SS Class:
major

3'SS Sequence:
CCCCCATCTGCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCTGAC

U12 Branch Point Sequence:
CTCTCCTGACCG

Flanking Amino Acid:
SRDNRFAIFIIPQGRETEWL

Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.3
0.55
1
70.8
34.6

Major BPS
68.9
0.47
1
59.2
39.1

Major PPT
72
0.5
0.8
64.9
29.4

Minor 5ss
32.8
-2
2.7
40.4
39.1

Minor BPS
52.7
-0
1.9
59.75
47.8

Associated Gene:

Gene:
EEF1AKNMT

Ensembl Gene ID:

Chromosome:
PEDO01016875.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

635 - 5345
4711