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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016875.1_5776_6062_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5776 - 6062
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
GTCCCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGCTGCTGATTC
Flanking Amino Acid:
PCFQPDGYDQTYAELPKAVK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
63.1
43.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.5
0.51
0.8
62.1
34.8
Minor 5ss
30.5
-2.2
2.8
34.9
34
Minor BPS
43.2
-0.5
2
50.09
40.7

Associated Gene:

Gene:
ITPA
Ensembl Gene ID:
ENSAPLG00000023450
Chromosome:
PEDO01016875.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027218
5655 - 8526
2872