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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016875.1_6458_7514_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6458 - 7514
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAGAGGAT
5'SS Class:
weak_major
3'SS Sequence:
GAGCCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GTGACCACACCA
Flanking Amino Acid:
AARQVRGPVIVGVWCCAGNA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.1
52.7
38.4
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
61.7
0.26
0.9
51.4
38.9
Minor 5ss
30.7
-2.2
4
46.2
45.1
Minor BPS
43
-0.5
2
54.46
43.5

Associated Gene:

Gene:
ITPA
Ensembl Gene ID:
ENSAPLG00000023450
Chromosome:
PEDO01016875.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027218
5655 - 8526
2872