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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016881.1_2592_2688_R

Intron Information:

Intron Rank:
135157
Intron Class:
major
Intron Phase:
Intron Coordinates:
2592 - 2688
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAGTA
5'SS Class:
major
3'SS Sequence:
TTCCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GAATATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
68.5
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.8
83.8
31.2
Minor 5ss
32.9
-1.9
3.5
38.4
46.7
Minor BPS
51.6
0.13
1.8
68.09
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020075
Chromosome:
PEDO01016881.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046769
1438 - 2943
1506
ENSAPLT00000020035
522 - 2943
2422