About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016881.1_618_1851_R

Intron Information:

Intron Rank:
135160
Intron Class:
major
Intron Phase:
Intron Coordinates:
618 - 1851
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCATC
5'SS Class:
major
3'SS Sequence:
ATTCTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.2
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.7
0.56
0.9
65.9
40.3
Minor 5ss
37.1
-1.5
3.3
50.7
46.2
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020075
Chromosome:
PEDO01016881.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027678
314 - 2943
2630